Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MESRSNKFGRKKNKKIGKLHKSYDAYLMELIEVTQENWHKQKVLM---RKSFEYDPNLEYEEKKAEARYFYLFKEARTRQLKNK
1VQ8 Chain:V ((5-57))
--------------HVQEIRDMTPAEREAELDDLKTELLNARAVQAAGGAPENPGRIKELRKAIARI-----------------
General information:
TITO was launched using:
RESULT:
Template:
1VQ8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 10547 for 259 contacts (40.7/contact) +
2D Compatibility (PS) -5340 + (NN) -3023 + (LL) 2144
1D Compatibility (HY) 2000 + (ID) 150
Total energy: 6178.0 ( 23.85 by residue)
QMean score : 0.331
(partial model without unconserved sides chains):
PDB file :
Tito_1VQ8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VQ8-query.scw
PDB file :
Tito_Scwrl_1VQ8.pdb
: