Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | -----------------MELIFRIF---EMKKTLYITNKLFFANWFVPVIGAVLIQVIGIIVSRRLVVKLLPDDYKFNLYIALL-------LFVPILASILLFLIYFQKRDFTSLGFTKDN-NVLTTISGFITGSLLM--FFIYICHWLSGFVEISSSNSFSFGPFFFLF-LAYFIQSLTEEILF--------RGYVMTTVTKFKG--SFAGVLCNSMLFSFIHFRNY-GITAIALFNLFLLGIIFSILFNMTKNILFVTGVHTTW-NFTMGC-VLGNKVSGGYSPVSLFRITE----------------------NSSFALWNGGDFGFEGGVLC---SL-----ILVGCLAYFSLESVRVSVRY----------------------------------------------------- |
4OFZ Chain:A ((85-513)) | QTVDDFKNLMYKMQETRRAIVFALLNEKDLTKDDVEILKRAYEKLTDNFQREMCTLTTKLSVNIGDETRGLEKDLKYLDALMNIRREEPNLLWPIIMSRVDLFSILANYHPKGKETFLKEYEDTVKFLKTFISSEAITGKKPIFITDWDGTMKDYCSQYATNLQPVYSAVGMTRFAASFTRISAVLTAGPLRGPGILDLTAMPIDGPVMFSGSWGREWWLSGKRVVHQDGITDEGFNALQRLDDEMKDLLHTSPFALVGSGVQRKVDRLTLGVQTVCHHVTSELSNRYQMAVKERMHNSQILVFDPSTELEVEVVAHNSGIIWNKGN-GVERLIKSLGDSLQSPGKILICGDTLSDIPMVRQAVKQNPDGVLAIFVGAKMSLREEVKQVIGDESRCCFVSCPDVIHAAMSQILNEHCIG |
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General information:
TITO was launched using:
| RESULT:
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Template: 4OFZ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -237817 for 2001 contacts (-118.8/contact) +
2D Compatibility (PS) -29725 + (NN) 1749 + (LL) 132
1D Compatibility (HY) -8000 + (ID) 2850
Total energy: -276511.0 ( -138.19 by residue)
QMean score : 0.204
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