Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVRPSVKPICEYCKVIRRNGRVMVICPTNPKHKQRQG
1MTP Chain:B ((333-367))
-TIRFSVDR--PFHIVVRRRGAILFLGSIADPHDPGPA
General information:
TITO was launched using:
RESULT:
Template:
1MTP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -1777 for 116 contacts (-15.3/contact) +
2D Compatibility (PS) -3794 + (NN) 181 + (LL) 468
1D Compatibility (HY) -2800 + (ID) 400
Total energy: -8122.0 ( -70.02 by residue)
QMean score : 0.402
(partial model without unconserved sides chains):
PDB file :
Tito_1MTP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1MTP-query.scw
PDB file :
Tito_Scwrl_1MTP.pdb
: