Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRKEKTSQLVQLAIVTAISIVLGMFISIPTP--TGFLTLLDAGIFFAAFYFGKKEGAVVGALAGFLIDLLKGYPNWMFFSLLIHGAQGYLAGL-------PGRRRLLGLISATLVMVLGYAIASGLMYGWGAVLPDIPGNIMQNMVGMVVGFALNKSLERVKK-
4HZU Chain:S ((1-164))
MTKGSLKENTIAAVLIAMTVALSILVVIPIPATKGIVTLCEVGIYTSAILYGRRMGLLVGGASGFLIDILTGYPVWCLFSLVIHGTQGLVVGWLLPRHHKGIRSMLLPLLVGSLVMVIGYCLATTLLFGWPAGLASIFGNVVQVGFGAGVTLSIVGPLTRLKPD
General information:
TITO was launched using:
RESULT:
Template:
4HZU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -101044 for 1237 contacts (-81.7/contact) +
2D Compatibility (PS) -16233 + (NN) -5770 + (LL) 0
1D Compatibility (HY) -20800 + (ID) 3100
Total energy: -146947.0 ( -118.79 by residue)
QMean score : 0.335
(partial model without unconserved sides chains):
PDB file :
Tito_4HZU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4HZU-query.scw
PDB file :
Tito_Scwrl_4HZU.pdb
: