Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFYTQNEEELIALGQKLGTVLKSGDIVLLTGNLGAGKTTLTKGIAKGLDIKQMIKSPTYTIVREYEGRVPLYHLDVYRIGDDPDSIDLDDFLFGQGVTVIEWGELLSDNLINNYLEIVITRSNQGRQVQLEAYGHRAREIIEAIQDV
2YZ2 Chain:A ((24-54))
--------------ENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHE
General information:
TITO was launched using:
RESULT:
Template:
2YZ2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -5540 for 122 contacts (-45.4/contact) +
2D Compatibility (PS) -3348 + (NN) -1257 + (LL) 1364
1D Compatibility (HY) -3200 + (ID) 550
Total energy: -12531.0 ( -102.71 by residue)
QMean score : 0.644
(partial model without unconserved sides chains):
PDB file :
Tito_2YZ2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YZ2-query.scw
PDB file :
Tito_Scwrl_2YZ2.pdb
: