Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTDTMILNDNHKIPTLGLGTWMINN-DRVAQVVKDAIELGYRHINTAQAYNNEKGVGVGIKESGITRESLFVTTKIAAEHKNYESATKSIDQSLEALGLDCIDLMIIHSP--QPWKE-WRETDKHFDQGNL
3D3F Chain:A ((4-134))
LKDTVKLHNGVEMPWFGLGVFKVENGNEATESVKAAIKNGYRSIDTAAIYKNEEGVGIGIKESGVAREELFITSKVWNEDQGYETTLAAFEKSLERLQLDYLDLYLIHWPGKDKYKDTWRALEKLYKDGKI
General information:
TITO was launched using:
RESULT:
Template:
3D3F.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -25475 for 937 contacts (-27.2/contact) +
2D Compatibility (PS) -13417 + (NN) -2169 + (LL) 0
1D Compatibility (HY) -12400 + (ID) 2750
Total energy: -56211.0 ( -59.99 by residue)
QMean score : 0.436
(partial model without unconserved sides chains):
PDB file :
Tito_3D3F.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3D3F-query.scw
PDB file :
Tito_Scwrl_3D3F.pdb
: