Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MANKQDLIAKVA-EATELTKKDSAAAVDAVFAAVADYLAEGEKVQLIGFGNFEVRERAARKGRNPQTGAEIEIAASKVPAFKAGKALKDAVK
1IHF Chain:B ((2-88))
--TKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRTGRNPKTGDKVELEGKYVPHFKPGKELRDRAN
General information:
TITO was launched using:
RESULT:
Template:
1IHF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -3076 for 429 contacts (-7.2/contact) +
2D Compatibility (PS) -9264 + (NN) -1690 + (LL) 352
1D Compatibility (HY) -6800 + (ID) 1700
Total energy: -22178.0 ( -51.70 by residue)
QMean score : 0.404
(partial model without unconserved sides chains):
PDB file :
Tito_1IHF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1IHF-query.scw
PDB file :
Tito_Scwrl_1IHF.pdb
: