Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKNSTLTKLTRVAILSALCVVLRYAFAPLPNIQPITAIFLITVVLFDLKEGV-ATVTITMLVSSFLMGFGPWVFLQIISFTLI--LCLWKFLIYPLTKAVCFGKITEVVLQTFFAGGLGVVYGVIIDTCFAWLYHMP-WWTYVLAGLSFNMAHALSTCLFYPLLLPILRRFRNEKIH----
3RLB Chain:A ((17-192))
-----NVRLLTEIAFMAALAFIISLIPNTVYGWIIVE-IACIPILLLSLRRGLTAGLVGGLIWGILSMITGHAYILSLSQAFLEYLVAPVSLGIAGLFRQKTAPLKLAPVLLGTFVAVLLKYFFHFIAGIIFWSQYAWKGWGAVAYSLAVNGISGILTAIAAFVILIIFVKKFPKLFIHSNY
General information:
TITO was launched using:
RESULT:
Template:
3RLB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -199352 for 1347 contacts (-148.0/contact) +
2D Compatibility (PS) -16504 + (NN) -3015 + (LL) 512
1D Compatibility (HY) -11200 + (ID) 1500
Total energy: -231059.0 ( -171.54 by residue)
QMean score : 0.246
(partial model without unconserved sides chains):
PDB file :
Tito_3RLB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RLB-query.scw
PDB file :
Tito_Scwrl_3RLB.pdb
: