Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTVFPKHFLWGGAVAANQVEGAFRTDGKGLSVQDVLPNGGLGDFTAKPTPDNLKLEAIDFYHNYKNDIKLFAEMGFKVFRTSIAWSRIFPNGDDSAPNEAGLQFYDNLFDELLKYNIEPLVTLSHYETPLHLAKTYNGWADRRLIAFFEKFAQTVMERYKDKVKYWLTFNEVNSILHMPFTSGAIMTDKSQLSPQELYQAIHHELVASARVTKLGRSINPNFKIGCMILAMPAYPMTSDPRDVLA-ARQFEQHNLLFSDIHVRGKYPTYIQSYFKNNGIKIKFEEGDEEVLAQNTVDFLSFSYY-MSVTQAYDFENYQSGQGNILGGLTNPHLTTSEWGWQIDPIGLRLVLNQYYERY-QIPLFIVENGLGAKDQLIETLDGDYTVEDDYRIDYMNQHLVQVAKAIEDGVEIMGYTSWGCIDCVSMSTAQLSKRYGLIYVDRNDDGTGSLQRYKKKSFGWYQKVIKTNGQSLFEHHNR |
| 1TR1 Chain:A ((5-441)) | ---FPQDFMWGTATAAYQIEGAYQEDGRGLSIWDTFAHTPGKVFNG----DNGNV-ACDSYHRYEEDIRLMKELGIRTYRFSVSWPRIFPNGDGEV-NQKGLDYYHRVVDLLNDNGIEPFCTLYHWDLPQALQDA-GGWGNRRTIQAFVQFAETMFREFHGKIQHWLTFNEPWCIAFLSNMLGVHAPGLTNL--QTAIDVGHHLLVAHGLSVRRFRELGTSGQIGIAPNVSWAVPYSTSEEDKAACARTISLHSDWFLQPIYQGSYPQFLVDWFAEQGATVPIQDGDMDIIGE-PIDMIGINYYSMSVNR------FNPEAGFLQSEEINMGLPVTDIGWPVESRGLYEVLH-YLQKYGNIDIYITENGACINDEVVNG-----KVQDDRRISYMQQHLVQVHRTIHDGLHVKGYMAWSLLDNFEWAEG-YNMRFGMIHVDFR-----TQVRTPKESYYWYRNVVSNNWLETRR---- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1TR1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -210821 for 3918 contacts (-53.8/contact) +
2D Compatibility (PS) -46035 + (NN) -14350 + (LL) 248
1D Compatibility (HY) -32000 + (ID) 7650
Total energy: -310608.0 ( -79.28 by residue)
QMean score : 0.527
|
|
|