Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTQMNFTDRATRVAIIANGKYQSKRVASKLFAAFKHDPDFYLSKKDPDIVISIGGDGMLLSAFHMYEKQLDKVRFVGVHTGHLGFYTDYRDFEVDTLINNLKNDEGEQISYPILKVTITLEDGRV-IRARALNESTIKRIEKTMVADVVINQVVFERFRGDGILVSTPTGSTAYNKSLGGAVLHPTIEALQLTEISSLNNRVYRTLGSSVIIPKKDAIEIVPKRVGVYTISIDNKTVHYKNVTKIEYSIDEKSINFVSTPSHTSFWERVNDAFIGEPEH
3V8N Chain:A ((2-264))
-----------KYMITSKGDEKSDLLRLNMIAGFG-EYDMEYDDVEPEIVISIGGDGTFLSAFHQYEERLDEIAFIGIHTGHLGFYADWRPAEADKLVKLLAKGEYQKVSYPLLKTTVKYG----EATYLALNESTVKSSGGPFVVDVVINDIHFERFRGDGLCMSTPSGTTAYNKSLGGALMHPSIEAMQLTEMASINN---RTIGSPLVFPKHHVVSLQPVNDKDFQISVDHLSILHRDVQEIRYEVSAKKIHFARFRSF-PFWRRVHDSFIED---
General information:
TITO was launched using:
RESULT:
Template:
3V8N.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -151291 for 2045 contacts (-74.0/contact) +
2D Compatibility (PS) -27950 + (NN) -12318 + (LL) 1444
1D Compatibility (HY) -24400 + (ID) 5950
Total energy: -220465.0 ( -107.81 by residue)
QMean score : 0.553
(partial model without unconserved sides chains):
PDB file :
Tito_3V8N.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3V8N-query.scw
PDB file :
Tito_Scwrl_3V8N.pdb
: