Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKKDKKIEIQISDAQVTVNGTKVDGYQLVIGKKIVGQIAELDSKFAVIKGEQVSGFYKNLDQAMGNIIEEYNLNR
3AKN Chain:A ((59-110))
----DVVFELGVDFAYSLADGTELTGTWTMEGNKLVGKFKRVDNGKELIAVREISGNELIQTYTYEGVEAKRIFKK
General information:
TITO was launched using:
RESULT:
Template:
3AKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 3300 for 263 contacts (12.5/contact) +
2D Compatibility (PS) -5752 + (NN) 534 + (LL) 308
1D Compatibility (HY) -2400 + (ID) 700
Total energy: -4710.0 ( -17.91 by residue)
QMean score : 0.321
(partial model without unconserved sides chains):
PDB file :
Tito_3AKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3AKN-query.scw
PDB file :
Tito_Scwrl_3AKN.pdb
: