Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIDILTLFPEMF-APLEHSIVGKAKERGLLEINYHNFRE-NAEKSRHVDDEPYGGGQGMLLRAQPIFDTID---KIDAQKARVILLDPAGRTFDQDFAEELSKEDELIFICGHYEGYDER-IKSLVTDEVSLGDFVLTGGELAAMTMVDATVRLIPEVIGKETSHQDDSFSSGLLEYPQYTRPYDYLGMTVPDVLMSGHHENIRKWRLEQSLRKTLERRPDLLENYAMTDEERLILEKIKTEIERTDTVNEQNNL
4YVK Chain:A ((21-263))
MWIGVISLFPEMFKAITEFGVTGRAVKHNLLKVECWNPRDFTFDKHKTVDDRPYGGGPGMLMMVQPLRDAIHTAKAAAGEGAKVIYLSPQGRKLDQGGVTELAQNQKLILVCGRYEGIDERLIQTEIDEEWSIGDYVLTGGELPAMTLIDAVARFIPGV---------DSFADGLLDCPHYTRPEVLEGLTVPPVLMSGHHEEIRKWRLKQSLQRTWLRRPELLEGLALTDEQRKLLKEAQAEHNS----------
General information:
TITO was launched using:
RESULT:
Template:
4YVK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -128131 for 1606 contacts (-79.8/contact) +
2D Compatibility (PS) -24174 + (NN) -8916 + (LL) 1084
1D Compatibility (HY) -22800 + (ID) 6000
Total energy: -188937.0 ( -117.64 by residue)
QMean score : 0.482
(partial model without unconserved sides chains):
PDB file :
Tito_4YVK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YVK-query.scw
PDB file :
Tito_Scwrl_4YVK.pdb
: