Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIVVPVMPRSLEEAQEIDLSKFDS-VDIIEWRADALPK----DDIINVAPAIFEKFAGHEIIFTLRTTREGGNIVLSDAEYVELIQKINSIYNPDYIDFEYFSHKEVFQEMLEFPN-----LVLSYHNFQETP--ENIMEIFSELTALAPRVVKIAVMPKNEQDVLDVMNYTRGFKTINPDQVYATVSMSKIGRISRFAGDVTGSSWTFAYLDSSIAPGQITISEMKRVKALLDAD
4GUF Chain:A ((41-273))
-KIIVSLMGKTITDVKSEALAYREADFDILEWRVDHFANVTTAESVLEAAGAIREIITDKPLLFTFRSAKAGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHNVAVIMSNHDFHKTPAAEEIVQRLRKMQELGADIPKIAVMPQTKADVLTLLTATVEMQERYADRPIITMSMSKTGVISRLAGEVFGSAATFGAV--------ISVADLRTVLTILHQ-
General information:
TITO was launched using:
RESULT:
Template:
4GUF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -128528 for 1736 contacts (-74.0/contact) +
2D Compatibility (PS) -23574 + (NN) -11992 + (LL) 156
1D Compatibility (HY) -17200 + (ID) 3300
Total energy: -184438.0 ( -106.24 by residue)
QMean score : 0.488
(partial model without unconserved sides chains):
PDB file :
Tito_4GUF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GUF-query.scw
PDB file :
Tito_Scwrl_4GUF.pdb
: