Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYTFYEYPKCTTCRSAKKELTELGLTFEAIDIKSNPPKASLLKELLENSPYDLKKFFNTSGNSYRELGLKDKFDDLTLDQALDLLASDGMLIKRPLLVKDNKILQIGYRTKYKDLNLV
2KOK Chain:A ((8-110))
--TIYGIKNCDTMKKARIWLEDHGIDYTFHDYKKEGLDAETLDRFLKTVPWE--QLLNRAGTTFRKLP-EDVRSNVDAASARELMLAQPSMVKRPVLERDGKLM-VGFKPAQYEAYFK
General information:
TITO was launched using:
RESULT:
Template:
2KOK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -39958 for 651 contacts (-61.4/contact) +
2D Compatibility (PS) -11712 + (NN) -8173 + (LL) 836
1D Compatibility (HY) -8000 + (ID) 1350
Total energy: -68357.0 ( -105.00 by residue)
QMean score : 0.722
(partial model without unconserved sides chains):
PDB file :
Tito_2KOK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KOK-query.scw
PDB file :
Tito_Scwrl_2KOK.pdb
: