Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFIFKRKKQVEMPLEKIPAH----IGIIMDGNGRWAKKRLKPRVMGHKAGMDALQEVTIAASGLGVKVLTVYAFSTENWSRPDDEVKFIMNLPVEFFDKYVPELDKNNVRVQVIGDTHKLPKATYDAMQRACLRTKHNSGLVLNFALNYGGRSEITNAIKEIAQDVLEAKLNPDDITEDLVANHLMTNSLPYLYRDPDLIIRTSGELRLSNFLPWQSAYSEFYFTPVLWPDFKKDELHKAIVDYNQRHRRFGSV
2E9A Chain:A ((14-240))
-----------------PAHGCRHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSS---------VSALMELFVWALDSEVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEKVQQGNLQPDQIDEEMLNQHVCMHELAPV----DLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAFANRE------
General information:
TITO was launched using:
RESULT:
Template:
2E9A.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -106837 for 1609 contacts (-66.4/contact) +
2D Compatibility (PS) -23325 + (NN) -12973 + (LL) 2364
1D Compatibility (HY) -16400 + (ID) 4700
Total energy: -161871.0 ( -100.60 by residue)
QMean score : 0.560
(partial model without unconserved sides chains):
PDB file :
Tito_2E9A.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2E9A-query.scw
PDB file :
Tito_Scwrl_2E9A.pdb
: