Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEIKEYENNPYHLAQLVDLINYCQNIEAKLDIKMAEQDDIFQIENYYQNRKGQFWIALENEKVVGSIALLRI--DDKTAVLKKFFTYPKYRGNPVRLGRKLFERFMLFARASKFTRIVLDTPEKEKRSHFFYENQGFKQITRDE------LDVDYIFPDRDSRIYVKLLD
1MK4 Chain:A ((1-156))
--MDIRTITSSDYEMVTSVLNEWWGGRQ----LKEKLP--RLFFEHFQ---DTSFITSEHNSMTGFLIGFQSQSDPETAYIHFSGVHPDFRKM--QIGKQLYDVFIETVKQRGCTRVKCVTSPVNKVSIAYHTKLGFDIEKGTKTVNGISVFANYDGPGQDRVLFVKNI-
General information:
TITO was launched using:
RESULT:
Template:
1MK4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -57576 for 1050 contacts (-54.8/contact) +
2D Compatibility (PS) -15267 + (NN) -1402 + (LL) 868
1D Compatibility (HY) -2400 + (ID) 1250
Total energy: -77027.0 ( -73.36 by residue)
QMean score : 0.494
(partial model without unconserved sides chains):
PDB file :
Tito_1MK4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1MK4-query.scw
PDB file :
Tito_Scwrl_1MK4.pdb
: