Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLFQSKINYPKKSSIITQITLWYSSFIFILVIGVLIGSFFISKSIAENKSKKNLEAKAVQMSQALAKGHRYEAFEDGIFYSVYDQNGKVIYSGFPKGFKRDLDHQHKHKKKLSLFSMENRTFQYVDIPISGKNQWLRAIRTVDRLDKQLTELLFSLGIVLPLMLIIITVGGYLILKRTFRPIQEITETAQFITQNEDYTKRIITKNNENELTELAAVINTMLASIESSFVREKQFNNDVSHELRTPVTVILSESEYGKNYAENLSEAKESFEVIHRQSLSMKKLVEQLLELTKAENPLSIQLEPLNFSIMMKQLVSDSSRLLDNTPIHLDSQIEDDLW-IIGQQTLLKRLFDNLFSNAIKFTNNHISISLRQSDNQIVFSIKDNGLGISVDDQSKIWNRFYQVDSARTKDSQSGIGLGLSLVKQIATIHRAKIWVDSKPDNGSQFTLTFPKLKKD |
4BIY Chain:A ((61-297)) | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGASFNQVVTALERMMTSQQRLLSDISHELRTPLTRL----QLGTALLRRRSGESKELERIETEAQRLDSMINDLLVMSRNQQKNALVSETIKANQLWSEVLDNAAFEAEQMGKSLTVNFPPGPWPLYGNPNALESALENIVRNALRYSHTKIEVGFAVDKDGITITVDDDGPGVSPEDREQIFRPFYRTD----------TGLGLAIVETAIQQHRGWVKAEDSPLGGLRLVIWLPLYKR- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4BIY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -76712 for 1595 contacts (-48.1/contact) +
2D Compatibility (PS) -23981 + (NN) -7515 + (LL) 17024
1D Compatibility (HY) -12400 + (ID) 2400
Total energy: -105984.0 ( -66.45 by residue)
QMean score : 0.399
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