Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNVNQNKKVLFLTDIENGLEPILQEATNTSAENMLTIQSYGASISHPYGEIMRSVIFAIYQEDVEEIFVVGTKDKKTSAGNGLTQLETMKDKIQTLDYLFQNCKPEFLGGTVDEWLNENSSDTIEKSVDMIRHHPLVPSYVKVRGLFVNHKGGKPSIAEVPDVKTGQAMPDHCLS
1G5C Chain:A ((20-162))
-DLKHSPKLCIITCMDSRLIDLLERALGIGRGDAKVIKNAGNIVDDG---VIRSAAVAIYALGDNEIIIVGHTDCGMARLDEDLIVSRMR-ELGVEEEVIENFSIDVLNPVGDEEEN------VIEGVKRLKSSPLIPESIGVHGLIIDINTGR---------------------
General information:
TITO was launched using:
RESULT:
Template:
1G5C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -63634 for 1010 contacts (-63.0/contact) +
2D Compatibility (PS) -15548 + (NN) -6849 + (LL) 1000
1D Compatibility (HY) -9600 + (ID) 1550
Total energy: -96181.0 ( -95.23 by residue)
QMean score : 0.471
(partial model without unconserved sides chains):
PDB file :
Tito_1G5C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1G5C-query.scw
PDB file :
Tito_Scwrl_1G5C.pdb
: