Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MANKELKRGLGARHIQMIALGGTIGVGLFMGSASTISWTGPSVLLAYAICGIF-IFFIMRAMGEMLYVEP-STGSFATFGHQYIHPMAGYITAWSNWFQWIIVGM---SEIIAVGSYTKYWFPDL-----PAWIPGIVAMVILGAANLISVKSFGEFEFWFAMIKIVTIILMIIAGIGIIFFGFGNGGDAIGLSNLWSHGGFFAGGFSGFFFALSLVIAAYQGVELIGITAGEAKDPQNTLRNAIQSIIWRILIFYIGAIFVIVTVYPWDELNSL---GSPFVSTFSKIGI--TAAAGIINFVVITAAMSGCNSGIFSAGRMLYTLGVNGQAPKFFKKISRNGVPLYGTIAVLIGLAVGVVLN-YIAPPKIFVYVY--SASVLPGMIPWFIILISHIGFRKAKGAALDKHPFKMPFA----PFTNYLTIAFLLMVLVGMWFNDDTRISLIVGVIFLALVVISYYVFGIGKRTQANLTKSEQAAE |
| 4DJK Chain:A ((12-457)) | --------QLTLLGFFAITASMVM--AVYEYP--TFATSGFSLVFFLLLGGILWFIPVGLCAAEMATVDGW---GVFAWVSNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILKW-PALNEDPITKTIAALIILWALALTQFGGTKYTARIAKVGFFAGILLPAFILIALAAIYLH-----------------TFFPDFSKVGTLVVFVAFILSYMGVEASATHVNEMSNPGRDYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEWTVRVISALLLLGVLAEIASWIVGPSRGMYVTAQKNLLPAAFAKMNKNGVPVTLVISQLVITSIALIILTNTGGGNNMSFLIALALTVVIYLCAYFMLFIGYIVLVLKHPDL--KRTFNIPGGKGVKLVVAIVGLLTSIMAFIVSFLP------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 4DJK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -391353 for 3176 contacts (-123.2/contact) +
2D Compatibility (PS) -38599 + (NN) -1967 + (LL) 4688
1D Compatibility (HY) -24800 + (ID) 3250
Total energy: -455281.0 ( -143.35 by residue)
QMean score : 0.225
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