Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence----------------------------------------------------------------------------------------------------------------------------------------------------------------MADVLRRAINQKKQFLKTKL--LLSEFYQGRGEQLADYTLSELEKEYKSLQKMKKEI--------------
4FFB Chain:C ((11-272))TLPLEERLTYKLWKARLEAYKELNQLFRNSQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFALKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVLFKKLKPIQVKDLHKLFAKVGDLFEWEKRELEKKRSQEEEA


General information:
TITO was launched using:
RESULT:

Template: 4FFB.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain C - contact count / total energy / energy per contact / energy per residue : 96 -18007 -187.57 -327.40
target 2D structure prediction score : 0.56
Monomeric hydrophicity matching model chain C : 0.54

3D Compatibility (PKB) : -187.57
2D Compatibility (Sec. Struct. Predict.) : 0.56
1D Compatibility (Hydrophobicity) : 0.54
QMean score : 0.620

(partial model without unconserved sides chains):
PDB file : Tito_4FFB.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4FFB-query.scw
PDB file : Tito_Scwrl_4FFB.pdb: