Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKKTMSAITAAAAVTSCFTGFGAASFSAPAKAAAQTNTLSENTNQSAAELVKNLYNTAYKGEMPQQAQGLTINKSTKGDVHAAFGEPERPVGGDNRFDLYHWNMGQ---PGYGFSYH-KDMTISEIRYFGTGVER---------QLNLGGVTPEVLQKQLG-PVNRVLTVPFTDEIDYVYDTGRYELHFVIGTDQTADHVNLKAK
3GMX Chain:B ((13-105))----------------------------------------------------------------------QFG-MDRTLVWQLAGADQSCSD-QVERIIC-YNNPDHYGPQGHFFFNAADK-LIHKRQMELFPAPKPTMRLATYNKTQTGMTEAQFWAAVPSDTCSA--------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 3GMX.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 235 -19942 -84.86 -252.43
target 2D structure prediction score : 0.66
Monomeric hydrophicity matching model chain B : 0.55

3D Compatibility (PKB) : -84.86
2D Compatibility (Sec. Struct. Predict.) : 0.66
1D Compatibility (Hydrophobicity) : 0.55
QMean score : 0.270

(partial model without unconserved sides chains):
PDB file : Tito_3GMX.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3GMX-query.scw
PDB file : Tito_Scwrl_3GMX.pdb: