Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKKQQFIDMQEQGTSTIPNLLLTHYKQLGLNETELILLLKIKMHLEKGSYFPTPNQLQEGMSISVEECTNRLRMFIQKGFLFIEECEDQNGIKFEKYSLQPLWGKLYE--YIQLAQNQTQERKAEGEQKSLYTIFEEEFARPLSPLECETLAIWQDQDQHDAQLIKHALKEAVLSGKLSFRYIDRILFEWKKNGLKTVEQAKIHSQKFRRVQAKQNEPQKEYKRQVPFYNWLEQ
2VN2 Chain:B ((1-120))MEKKKVAEWLAQGSIAVPKLLLGHYKQLGLGEGELVLLLHMQSFFEEGVLFPTPAELAERMTVSAAECMEMVRRLLQKGMIAIEE---------EKYTLEPLWEKLVHHLYTQAAQQGEL------------------------------------------------------------------------------------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 2VN2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 310 -62982 -203.17 -577.81
target 2D structure prediction score : 0.48
Monomeric hydrophicity matching model chain B : 0.73

3D Compatibility (PKB) : -203.17
2D Compatibility (Sec. Struct. Predict.) : 0.48
1D Compatibility (Hydrophobicity) : 0.73
QMean score : 0.649

(partial model without unconserved sides chains):
PDB file : Tito_2VN2.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2VN2-query.scw
PDB file : Tito_Scwrl_2VN2.pdb: