Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMMRTIKVGSRRSKLAMTQTKWVIQKLKEINPSFAFEIKEIVTKGDRIVDVTLSKVGGKGLFVKEIEQALLNEEIDMAVHSMKDMPAVLPEGLVIGCIPEREDPRDALISKNRV---KLSEMKKGAVIGTSSLRRSAQLLIERPDLTIKWIRGNIDTRLQKL-ETEDYDAIILAAAGLSRMGWKQDVVTEFLEPERCLPAVGQGALAIECRESDEELLALFSQFTDEYTKRTVLAERAFLNAMEGGCQVPIAGYSVL-NGQDEIEMTGLVASPDGKIIFKETVTG--------NDPEEVGKRC------------------AALMADKGAKDLIDRVKRELDEDGK
3EQ1 Chain:B ((19-356))--RVIRVGTRKSQLARIQTDSVVATLKASYPGLQFEIIA---------------------FTKELEHALEKNEVDLVVHSLKDLPTVLPPGFTIGAICKRENPHDAVVFHPKFVGKTLETLPEKSVVGTSSLRRAAQLQRKFPHLEFRSIQGNLNTRLRKLDEQQEFSAIILATAGLQRMGW-HNRVGQILHPEECMYAVGQGALGVEVRAKDQDILDLVGVLHDPETLLRCIAERAFLRHLEGGCSVPVAVHTAMKDGQ--LYLTGGVWSLDGSDSIQETMQATIHVPQHEDDPQLVGITARNIPRGPQLAAQNLGISLANLLLSKGAKNILD-VARQ------


General information:
TITO was launched using:
RESULT:

Template: 3EQ1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 1495 3815 2.55 13.57
target 2D structure prediction score : 0.61
Monomeric hydrophicity matching model chain B : 0.80

3D Compatibility (PKB) : 2.55
2D Compatibility (Sec. Struct. Predict.) : 0.61
1D Compatibility (Hydrophobicity) : 0.80
QMean score : 0.617

(partial model without unconserved sides chains):
PDB file : Tito_3EQ1.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3EQ1-query.scw
PDB file : Tito_Scwrl_3EQ1.pdb: