Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software) Input alignment information: Query sequence MSSKLLRGTFVLTLGTYISRILGMVYLIPFSIMVGATGGALFQYGYNQ-YTLFLNIAT---MGFPAAVSKFVSKYNSKGDYETSRKMLKAGMSVMLVTGMIAFF----ILYLSAPMFAEISLGGKDNNGLTIDH---------VVYVIRMVS-----LALLVVPIMSLVR----GFFQGHQ--MMGPTAVSQVVEQIVRIIFLLSATFLILKVFNGGLVIAVGYATFAALIGAFGGLVVLYIYWNKRKGSLLAMMPNTGPTANLSYKKMFFELFSYAAPYVFVGLAIPLYNYIDTNTFNKAMIEAGHQAISQDMLAILTLYVQKLVMIPVSLATAFGLTLIPTITESFTSGNYKLLNQQINQTMQTILFLIIPAVVGISLLSGPTYTFFYGSESLHPELGANILLWYSPVAILFSLFTVNAAILQGINKQKFAVVSLVIGVVIKLVLNVPLIKLMQADGAILATALGYIASLLYGFIMIKRHAGYSYKILVKRTVLMLVLSAIMGIAVKIVQWVLGFFISYQDGQMQAAIVVVIAAAVGGAVYLYCGYRLGFLQKILGRRLPGFFRKGRHAG 4YDD Chain:B ((5-333)) ----MKAPRRQLTYVTDLNKCIGCQ-------TCTVACKKLWTTGPGQDFMYWRNVETAPGLGYP-------RNWQTKGGGYKNGELQKGKIPPMIDYGIPFEFDYAGRLFEGKPGRVRPSPTPRSAPNWDEDQGAGEYPNNSFFYLPRMCNHCTKPACLEACPNEAIYKREQDGIVVIHQDKCKGAQACVQSC--PYAKPYFNPLTNKANKCIGCFPRIEQGVAP-ACVAQCVGR--AMHVGFVDDVNSSVYKLIKQYKVALPLHPEFGTEPNVFYVPPVL-GPRIEMANG-EPSTDPKIPLAQLEGLFGKQVRDVLAILQSEREKKMKGLASDLMDVLIGRRSTDMMISPLT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

General information: TITO was launched using: RESULT: Template: 4YDD.pdb Alignment : align.pir Tito was launched with SMD and SCWRL Tito text output Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 1562 -81652 -52.27 -271.27 target 2D structure prediction score : 0.31 Monomeric hydrophicity matching model chain B : 0.53 3D Compatibility (PKB) : -52.27 2D Compatibility (Sec. Struct. Predict.) : 0.31 1D Compatibility (Hydrophobicity) : 0.53 QMean score : 0.127

(partial model without unconserved sides chains): PDB file : Tito_4YDD.pdb: (Unconserved sides chains are recalculated) : Sequence: align-4YDD-query.scw PDB file : Tito_Scwrl_4YDD.pdb: