Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMPSVESFELDHNAVVAPYVRHCGVHKVGTDGVVNKFDIRFCQPNKQAMKPDTIHTLEHLLAFTIRSHAEKYDHFDIIDISPMGCQTGYYLVVSGEPTSAEIVDLLEDTMKEAVEITE---IPAANEKQCGQAKLHDLEGAKRLMRFWLSQDKEELLKVFG
1JOE Chain:C ((9-144))--------VDHTKMNAPAVRIAKTMLTPKGDNITVFDLRFCIPNKEILSPKGIHTLEHLFAGFMRDHLNG-DSIEIIDISPMGCRTGFYMSLIGTPNEQKVSEAWLASMQDVLGVQDQASIPELNIYQCGSYTEHSLEDAHEIAK---------------


General information:
TITO was launched using:
RESULT:

Template: 1JOE.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain C - contact count / total energy / energy per contact / energy per residue : 565 -71896 -127.25 -540.57
target 2D structure prediction score : 0.67
Monomeric hydrophicity matching model chain C : 0.72

3D Compatibility (PKB) : -127.25
2D Compatibility (Sec. Struct. Predict.) : 0.67
1D Compatibility (Hydrophobicity) : 0.72
QMean score : 0.581

(partial model without unconserved sides chains):
PDB file : Tito_1JOE.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1JOE-query.scw
PDB file : Tito_Scwrl_1JOE.pdb: