Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence--MKALIPKQHGAWAMLLIPFLLGMVKGGPVIWHIPLFLGWLFLYLAVYPVTLALKKKQSKPYQKWMCYYGFPTCCFLMISVFHKPPLIWVGVSLLPLFLIHMYFARRKNERALLNDVAGVLFFCSGGFASCWLGMGTLDGWAWFIFLQSALFFIGSSFYVKSVIRERKNRAFAYWSWGYHLLLPFLSALFGAGWAFLAFIPSSLRAWFFHGRDWPVKTIGILEIVNACFFLAVMCLFITR-
4Q7J Chain:D ((3-179))ESFAQLFEESLKEIETRPGSIVRGVVVAIDK---------------DVVLVDAGLKSESAIPAEQFK-------------------------------------NAQGELEIQVGDEVDVALDAVEDGFGETLLSREKAKRHEAWITLEKAY---EDAETVTGVINGKVKG-------GFTVELNGIRAFLPGS---LVDVRPVRDTLHLEGKELEFKVIKLDQKRNNVVVSRRAVIESENS


General information:
TITO was launched using:
RESULT:

Template: 4Q7J.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain D - contact count / total energy / energy per contact / energy per residue : 531 -32141 -60.53 -184.72
target 2D structure prediction score : 0.25
Monomeric hydrophicity matching model chain D : 0.55

3D Compatibility (PKB) : -60.53
2D Compatibility (Sec. Struct. Predict.) : 0.25
1D Compatibility (Hydrophobicity) : 0.55
QMean score : 0.055

(partial model without unconserved sides chains):
PDB file : Tito_4Q7J.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4Q7J-query.scw
PDB file : Tito_Scwrl_4Q7J.pdb: