Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKEAINATIQRILRTDRGITANQV-----LVDDLGFDSLKLFQLITELEDEFDIAISFRDAQNIKTVGDVYTSVAVWFPETAKPAPLGKGTA
2KOO Chain:A ((4-71))
-QEEIVAGLAEIVNEIAGIPVEDVKLDKSFTDDLDVDSLSMVEVVVAAEERFDVKIPDDDVKNLKTVGD-----------------------
General information:
TITO was launched using:
RESULT:
Template:
2KOO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -40500 for 440 contacts (-92.0/contact) +
2D Compatibility (PS) -6916 + (NN) -2734 + (LL) 1512
1D Compatibility (HY) -6400 + (ID) 1200
Total energy: -56238.0 ( -127.81 by residue)
QMean score : 0.594
(partial model without unconserved sides chains):
PDB file :
Tito_2KOO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KOO-query.scw
PDB file :
Tito_Scwrl_2KOO.pdb
: