Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLILTADVDHLGSIGDTVEVKDGYGRNFLLPRGLAIVASRGAQKQADEIRRAR-ETKSVRDLEHANEIKAAIEALGPIALPVKTSADSGKLFGSVTAADVVAAIKKAGGPNLDKRIVRLPKTHIKAVGTHFVSVHLHPEIDVEVSLDVVAQS
5GAF Chain:H ((1-149))
MQVILLDKVANLGSLGDQVNVKAGYARNFLVPQGKAVPATK-KNIEFFEARRAELEAKLAEVLAAANARAEKINALETVTIASK-AGDEGKLFGSIGTRDIADAV-TAAGVEVAKSEVRLPNGVLRTTGEHEVSFQVHSEVFAKVIVNVVAE-
General information:
TITO was launched using:
RESULT:
Template:
5GAF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -95235 for 986 contacts (-96.6/contact) +
2D Compatibility (PS) -16183 + (NN) -4148 + (LL) -84
1D Compatibility (HY) -10000 + (ID) 3050
Total energy: -128700.0 ( -130.53 by residue)
QMean score : 0.610
(partial model without unconserved sides chains):
PDB file :
Tito_5GAF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5GAF-query.scw
PDB file :
Tito_Scwrl_5GAF.pdb
: