Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPAVTTPSNHWGDERRKLSHQPPVRGQILGRRQARRLSQHFARVGVEAPPKRLQEMLLGAPAADEEWT--DVKFALIVTQLNHEKRVAKFHRLQRRATHSLICLGLVLVALNFLICLAYIFFSLTQHAAAL
4AYB Chain:K ((33-66))
---------------------------------------------ARVISARALQLAMGAPALIDINNISSTDVISIAE----------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4AYB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -9895 for 146 contacts (-67.8/contact) +
2D Compatibility (PS) -3230 + (NN) 916 + (LL) 8180
1D Compatibility (HY) 1200 + (ID) 300
Total energy: -3129.0 ( -21.43 by residue)
QMean score : 0.297
(partial model without unconserved sides chains):
PDB file :
Tito_4AYB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4AYB-query.scw
PDB file :
Tito_Scwrl_4AYB.pdb
: