Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKVWITGAGGMMGSHLAEMLLAAGHDVYATYCRPTIDPSDLQFNGAE---VDITDWCSVYDSIATFRPDAVFHLAAQSYPAVSWARPVETLTTNMVGTAIVFEALRRV--RPHAKIIVAGSSAEYGFVDPSEVPINERRELRPLHPYGVSKAATDMLAYQYHKSYGMHTVVARIFNCTGPRKVGDALSDFVRRCTWLEHHPEQSA-IRVGNLKTKRTIVDVRDLNRALMLMLDKGEAGADYNVGGSIAYEMGDVLKQVIAACKRDD---IVPEVDPALLRPTDEKIIYGDCSKLAAITGWQQEICLTQTIADMFDYWRSKSESALMV |
4LW8 Chain:A ((20-321)) | -RAFVTGLTGFTGRYMAERLQAAGYDVWGTVAPGTPRPADPAFAQCTLLPVDLLDAEAMRAAAADARPDAVVHLAARA-------EPSQTYAVNIVGTRNLLAALSGLDRRPSA-VLLASSANIYG--NSTAGVLDETVAPAPANDYAVSKLAMEYAAKLWADR--LPIVIARPFNYTG---VGQ--SDAYLLPKLVAHYARNAPRISLGNLDVSRDFSDVRDVTAAYLKLIEAAPAGETFNVCSERAYS----LKEVLAMLSRIAGYVIDVTIDPRFVRHNEVKSLSGSRDKLRRAVGELPVTPLDETLRWMVDAMRA-------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4LW8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -166040 for 2416 contacts (-68.7/contact) +
2D Compatibility (PS) -31267 + (NN) -14746 + (LL) 2404
1D Compatibility (HY) -13600 + (ID) 5000
Total energy: -228249.0 ( -94.47 by residue)
QMean score : 0.497
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