Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGEFDPKLRFAQSPVARLATSTPDGTPHLVPVVFALGARRPAEATGADVIYTAVDAKRKTTQRLRRLANLEHNPRASVLVDSYADDWTQLWWVRADGVAAIHRDGEVMRAAYRLLRAKYAQYQSVPLNGPVIAIAVQRWASWHA
4ZKY Chain:B ((5-143))
---FDAVTAFADAPAAVLSTLNADGAPHLVPVVFAVHV--PHVEGQPARIYTAVDAKRKTTRNLRRLANIDRDSRVSLLVDHYSDDWTQLWWVRADGVATTHHSGDEVATGYALLRAKYHQYERVSLDGPVISVEVSRWASWQA
General information:
TITO was launched using:
RESULT:
Template:
4ZKY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -83422 for 980 contacts (-85.1/contact) +
2D Compatibility (PS) -15592 + (NN) -9671 + (LL) 340
1D Compatibility (HY) -13600 + (ID) 4150
Total energy: -126095.0 ( -128.67 by residue)
QMean score : 0.651
(partial model without unconserved sides chains):
PDB file :
Tito_4ZKY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4ZKY-query.scw
PDB file :
Tito_Scwrl_4ZKY.pdb
: