Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MNAPKLVIGANGFLGSHVTRQLVADCAPQKG-EVRAMVRPAANTRSID---DLP-----LTRFHGDVFDTATVAEAMAGCDDVYYCVVDTRAWLRDP-SPLFRTNVAGLRNVL-DVATDASLRRFVFTSSYATVGRRRGHVATEEDRVDT-------RKVTP--YVRSRVAAEDLVLQYAHDAGLPAVAMCVSTTYGGGDWGRTPHGAFIAGAVFGRLPFTMRGIRL-EAVGVDDAARALILAAERGRNGERYLISER---MMPLQEVVRIAADEAGVPPPRWSISVPVLYALGALGSLRARLTGKDTELSLASVRMMRSEADVDHGKAVRELGWQPRPVEESIREAARFWAAMRTVGKDPAAS |
2NNL Chain:D ((10-277)) | ------VTGASGFIGSWLVMRLL-----ERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTLWKADLADEGSFDEAIKGCTGVFHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTVRRLVFTSSAGTVNIQEHQLPVYDESCWSDMEFCRAKKMTAWMYFVSKTLAEQAAWKYAKENNIDFITIIPTLVVGPFIMSSMPPSLITALSPITGNEAHYSIIRQGQFVHLDDLCNAHIYLFENPKAEGRYICSSHDCIILDLAKMLREKYPEYNIP------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2NNL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -149863 for 1905 contacts (-78.7/contact) +
2D Compatibility (PS) -26438 + (NN) -12324 + (LL) 6440
1D Compatibility (HY) -16400 + (ID) 3350
Total energy: -201935.0 ( -106.00 by residue)
QMean score : 0.422
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