Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTLLNDIQVWTTACAYDHLIPGRGVGVLLDDGSQVALFRLDDGSVHAVGNVDPFSGAAVMSRGIVGDRGGRAMVQSPILKQAFALDDGSCLDDPRVSVPVYPARVTPEGRIQVARVAV
1VM9 Chain:A ((1-103))
--------SFEKICSLDDIWVGEMETFETSDGTEVLIVNSEEHGVKAYQAMCPHQEI-LLSEGSYEG----GVITCRAHLWTFNDGTGHGINPDDAALAEYPVEVKG-DDIYVSTKG-
General information:
TITO was launched using:
RESULT:
Template:
1VM9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61349 for 747 contacts (-82.1/contact) +
2D Compatibility (PS) -11310 + (NN) -6493 + (LL) 1076
1D Compatibility (HY) -4000 + (ID) 900
Total energy: -82976.0 ( -111.08 by residue)
QMean score : 0.497
(partial model without unconserved sides chains):
PDB file :
Tito_1VM9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VM9-query.scw
PDB file :
Tito_Scwrl_1VM9.pdb
: