Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMTLKVAIGPQNAFVLRQGIRREYVLVIVALCGIAD-----GALIAAGVGGFAALIHAHPNMTLVARFGGAAFLIGYALLAARNAWRPSGL-VPSESGPAALIGVVQMCLVVTFLNPHVYLDTVVLIGALANEESDLRWFFGAGAWAASVVWFAVLGFSAGRLQPFFATPAAWRILDALVAVTMIGVAVVVLVTSPSVPTANVALII
4IP8 Chain:A ((1-105))
-------------------MRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNYDAAKRGPGGVWAAEAISDARENIQRFFGHGAEDSLADQAANEWGRSGKDPNHFRPAGLPEKY-----------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4IP8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -72987 for 678 contacts (-107.7/contact) +
2D Compatibility (PS) -10281 + (NN) -1317 + (LL) 9488
1D Compatibility (HY) 5600 + (ID) 850
Total energy: -70347.0 ( -103.76 by residue)
QMean score : 0.114
(partial model without unconserved sides chains):
PDB file :
Tito_4IP8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4IP8-query.scw
PDB file :
Tito_Scwrl_4IP8.pdb
: