Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNILSRIFARTPSLRTRVVVATAIGAAIPVLIVGTVVWVGITNDRKERLDRRLDEAAGFAIPFVPRGLDEIPRSPNDQDALITVRRGNVIKSNSDITLPKLQDDYADTYVRGVRYRVRTVEIPGPEPTSVAVGATYDATVAETNNLHRRVLLICTFAIGAAAVFAWLLAAFAVRPFKQLAEQTRSIDAGDEAPRVEVHGASEAIEIAEAMRGMLQRIWNEQNRTKEALASARDFAAVSSHELRTPLTAMRTNLEV----LSTLDLPDDQRKEVLNDVIRTQSR----IEATLSALERLAQGELSTSDDHVPVDITDLLDRAAHDAARIYPDLDVSL-----VPSPTCIIVGLPAGLRLAVDNAIANAVKHGGA----TLVQLSAVSSRAGVEIAIDDNGSGVPEGERQVVFERFSR-GSTASHS--GSGLGLALVAQQAQLHGGTASLENSPLGGARLVLRLPGPS |
| 4JAV Chain:A ((9-246)) | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ELERLKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNSLGELDLS--TLKEFL-EVIIDQSNHLENLLNELLDFSRLERKSLQINRE--KVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVEAYID-PTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEKDGGVLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKEIVELHGGRIWVESEVGKGSRFFVWIP--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4JAV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -73436 for 1494 contacts (-49.2/contact) +
2D Compatibility (PS) -23588 + (NN) -11233 + (LL) 16864
1D Compatibility (HY) -14400 + (ID) 3700
Total energy: -109493.0 ( -73.29 by residue)
QMean score : 0.572
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