Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDPTIAAGALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVGLVEAAYFINLAFMALFVFATPVK
1YCE Chain:A ((10-83))
----VLAASAVGAGTAMIAG-IGPGVGQGYAAGKAVESVARQPEAKGDIISTMVLGQAVAESTGIYSLVIALILLYANP--
General information:
TITO was launched using:
RESULT:
Template:
1YCE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -34079 for 419 contacts (-81.3/contact) +
2D Compatibility (PS) -7396 + (NN) 603 + (LL) 444
1D Compatibility (HY) -5600 + (ID) 1150
Total energy: -47178.0 ( -112.60 by residue)
QMean score : 0.062
(partial model without unconserved sides chains):
PDB file :
Tito_1YCE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YCE-query.scw
PDB file :
Tito_Scwrl_1YCE.pdb
: