Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKPTSAGQADDALVRLARERFDLPDQVRRLARPPVPSLEPPYGLRVAQLTDAEMLAEWMNRPHLAAAWEYDWPASRWRQHLNAQLEGTYSLPLIGSWHGTDGGYLELYWAAKDLISHYYDADPYDLGLHAAIADLSKVNRGFGPLLLPRIVASVFANE-PRCRRIMFDPDHRNTATRRLCEWAGCKFLGEHDTTNRRMALYALEAPTTAA
1YK3 Chain:A ((10-207))
---------ADDALVRLARERFDLPDQVRRLARPPVPSLEPPYGLRVAQLTDAEMLAEWMNRPHLAAAWEYDWPASRWRQHLNAQLEGTYSLPLIGSWHGTDGGYLELYWAAKDLISHYYDADPYDLGLHAAIADLSKVNRGFGPLLLPRIVASVF-ANEPRCRRIMFDPDHRNTATRRLCEWAGCKFLGEHDTTNRRMALYALEAPT---
General information:
TITO was launched using:
RESULT:
Template:
1YK3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -101831 for 1492 contacts (-68.3/contact) +
2D Compatibility (PS) -20920 + (NN) -7338 + (LL) 784
1D Compatibility (HY) -26400 + (ID) 9750
Total energy: -165455.0 ( -110.89 by residue)
QMean score : 0.517
(partial model without unconserved sides chains):
PDB file :
Tito_1YK3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YK3-query.scw
PDB file :
Tito_Scwrl_1YK3.pdb
: