Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTAPAICNTTETVHGIATSLGAVARQASLPRIVGTVVGITVLVVVALLVPVPTAVELRDWAKSLGAWFPLAFLLVHTVVTVPPFPRTAFTLAAGLLFGSVVGVFIAVVGSTASAVIAMLLVRATGWQLNSLVRRRA--INRLDERLRERGWLAILSLRLIPVVPFAAINYAAGASGVRILSFAWATLAGLLPGTAAVVILGDAFAGSGSPLLILVSVCTGALGLTGLVYEIRNYRRQHRRMPGYDDPVREPALI |
5CMZ Chain:B ((2-33)) | ----------------------------------------------------------------------------------------------------------------------MTWEEWDKKIEELIKKSEELIKKIEEQIKKQE-------------------------------------------------------------------------------------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 5CMZ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) 441 for 106 contacts (4.2/contact) +
2D Compatibility (PS) -3299 + (NN) -1522 + (LL) 18096
1D Compatibility (HY) -2400 + (ID) 150
Total energy: 11166.0 ( 105.34 by residue)
QMean score : 0.176
|
|
|