Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MGLSDWELAAARAAIARG----LDEDLRYGPDVTTLATVPASATTTASLVTREAGVVAG---LDVALLTLNEVLGTNGYRVLDRVEDGARVPPGEALMTLEAQTRGLLTAERTMLNLVGHLSGIATATAAWVDAVRGTKAKIRDTRKTLPGLRALQKYAVRTGGGVNHRLGLGDAALIKDNHVAAAGSVVDALRAVRNAAPDLPCEVEVDSLEQLDAVLPEKPELILLDNFAVWQTQTAVQRRDSRAPTVMLESSGGLSLQTAATYAETGVDYLAVGALTHSVRVLDIGLDM |
3GNN Chain:A ((23-294)) | --------AAFDAAIARNVADALAEDVGSG-----L--VPDGAPRRARVIVREDAVLCGVPWFDAVVRAVDPSIEVDW-----RHREGDRMSADSTVCELRGPARALLTAERNALNFLQLLSGVASATRQYVDRIADTRARILDTRKTLPGLRLAQKYAVRVGGGANQ-------------------GVGEALDAAFALN--VPVQIEVETLDQLRTALAHGARSVLLDNFTLDMMRDAVRVTEGRA---VLEVSGGVNFDTVRAIAETGVDRISIGALTKDVRATDYSM-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3GNN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -122883 for 1849 contacts (-66.5/contact) +
2D Compatibility (PS) -26090 + (NN) -13665 + (LL) 2428
1D Compatibility (HY) -17200 + (ID) 5200
Total energy: -182610.0 ( -98.76 by residue)
QMean score : 0.637
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