Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTRSGHPVTLDDLPLRADLRGKAPYGAPQLAVPVRLNTNENPHPPTRALVDDVVRSVREAAIDLHRYPDRDAVALRADLAGYLTAQTGIQLGVENIWAANGSNEILQQLLQAFGGPGRSAIGFVP-SYSMHPIISDGTHTEWIEASRANDFGLDVDVAVAAVVDRKPDVVFIASPNNPSGQSVSLPDLCKLLDVAPGIAIV--DEAYGEFSSQPSAVSLVEEYPSKLVVTRTMSKAFAFAGGRLGYLIATPAVIDAMLLVRLPYHLSS-VTQAAARA-------ALRHSDDTLSSVAALIAERERVTTSLNDMGF--RVIPSDANFVLFGEFADAPAAWRRYLEAGILIRDVG----IPGYLRATTGLAEENDAFLRASARIATDLVPVTRSPVGAP |
| 1GEW Chain:A ((5-350)) | --------TITDLA-RENVRNL-----------VWLNANEYPTAVEFQLTQQT----------LNRYPECQPKAVIENYAQY----AGVK--PEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSAETIGVECRTVPTLDNWQLDLQ-GISDKLD-GVKVVYVCSPNNPTGQLINPQDFRTLLELTRGKAIVVADEAYIEFCPQASLAGWLAEYP-HLAILRTLSKAFALAGLRCGFTLANEEVINLLMKVIAPYPLSTPVADIAAQALSPQGIVAMRE------RVAQIIAEREYLIAALKEIPCVEQVFDSETNYIL-ARFKASSAVFKSLWDQGIILRDQNKQPSLSGCLRITVGTREESQRVIDA------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1GEW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -157333 for 2524 contacts (-62.3/contact) +
2D Compatibility (PS) -34837 + (NN) -23444 + (LL) 3808
1D Compatibility (HY) -27600 + (ID) 5800
Total energy: -245206.0 ( -97.15 by residue)
QMean score : 0.427
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