Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTTTQTAKASRRARIERRTRESDIVIELDLDGTGQVAVDTGVPFYDHMLTALGSHASFDLTVRATGDVEIEAHHTIEDTAIALGTALGQALGDKRGIRRFGDAFIPMDETLAHAAVDLSGRPYCVHTGEPDHLQHTTIAGSSVPYHTVINRHVFESLAANARIALHVRVLYGRDPHHITEAQYKAVARALRQAVEPDPRVSGVPSTKGAL
2F1D Chain:P ((10-192))
---------GRIGEVKRVTKETNVSVKINLDGTGVADSSSGIPFLDHMLDQLASHGLFDVHVRATGDVHIDDHHTNEDIALAIGTALLKALGERKGINRFGDFTAPLDEALIHVSLDLSGRPYLGYNLEIP----TQRVGT---YDTQLVEHFFQSLVNTSGMTLHIRQLAGENSHHIIEATFKAFARALRQATETDPR-----------
General information:
TITO was launched using:
RESULT:
Template:
2F1D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -110685 for 1553 contacts (-71.3/contact) +
2D Compatibility (PS) -19713 + (NN) -8274 + (LL) 1576
1D Compatibility (HY) -11600 + (ID) 4650
Total energy: -153346.0 ( -98.74 by residue)
QMean score : 0.480
(partial model without unconserved sides chains):
PDB file :
Tito_2F1D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2F1D-query.scw
PDB file :
Tito_Scwrl_2F1D.pdb
: