Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQTLTVADFALRLAVGVGCGAIIGLERQWRARMAGLRTNALVATGATLFVLYAVATEDSSPTRVASYVVSGIGFLGGGVILREGFNVRGLNTAATLWCSAAVGVLAASGHLVFTLIGTGTIVAVHLLGRPLGRLVDRDNAVEDEGLQPYQVRVICRPKAETYVRAHIVQRTSSNDITLRGIRTGPAGDDNITLTAHLLMVGHTPAKLERLVAELSLQPGVYAVHWYAGEHAQAE
2LQJ Chain:A ((147-234))
--------------------------------------------------------------------------------------------------------------------------------------------------QPYQVRVICRPKAETYVRAHIVQRTSSNDITLRGIRTGPAGDDNITLTAHLLMVGHTPAKLERLVAELSLQPGVYAVHWYAGEHAQAE
General information:
TITO was launched using:
RESULT:
Template:
2LQJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -59284 for 633 contacts (-93.7/contact) +
2D Compatibility (PS) -9573 + (NN) -3026 + (LL) 10748
1D Compatibility (HY) -11200 + (ID) 4400
Total energy: -76735.0 ( -121.22 by residue)
QMean score : 0.631
(partial model without unconserved sides chains):
PDB file :
Tito_2LQJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LQJ-query.scw
PDB file :
Tito_Scwrl_2LQJ.pdb
: