Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLTTMIKTAVAVVAMAAIATFAAPVALAAYPITGKLGSELTMTDTVGQVVLGWKVSDLKSSTAVIPGYPVAGQVWEATATVNAIRGSVTPAVSQFNARTADGINYRVLWQAAGPDTISGATIPQGEQSTGKIYFDVTGPSPTIVAMNNGMEDLLIWEP
1LMI Chain:A ((1-131))
----------------------------SAYPITGKLGSELTMTDTVGQVVLGWKVSDLKSSTAVIPGYPVAGQVWEATATVNAIRGSVTPAVSQFNARTADGINYRVLWQAAGPDTISGATIPQGEQSTGKIYFDVTGPSPTIVAMNNGMEDLLIWEP
General information:
TITO was launched using:
RESULT:
Template:
1LMI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73149 for 983 contacts (-74.4/contact) +
2D Compatibility (PS) -13919 + (NN) -7383 + (LL) 3776
1D Compatibility (HY) -16800 + (ID) 6500
Total energy: -113975.0 ( -115.95 by residue)
QMean score : 0.455
(partial model without unconserved sides chains):
PDB file :
Tito_1LMI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1LMI-query.scw
PDB file :
Tito_Scwrl_1LMI.pdb
: