Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDPLHVTFVCTGNICRSPMAEKMFAQQLRHRGLGDAVRVTSAGTGNWHVGSCADERAAGVLRAHGYPTDHRAAQVGTEHLAA-DLLVALDRNHARLL----RQLGVEAARVRMLRSFDPRSGTHALDVEDPYYGDHSDFEEVFAVIESALPGLHDWVDERLARNGPS
1DG9 Chain:A ((8-142))
------VLFVCLGNICRSPIAEAVFRKLVTDQNISDNWVIDSGAVSDWNVGRSPDPRAVSCLRNHGINTAHKARQVTKEDFVTFDYILCMDESNLRDLNRKSNQVKNCRAKIELLGSYDPQ---KQLIIEDPYYGNDADFETVY------------------------
General information:
TITO was launched using:
RESULT:
Template:
1DG9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -57829 for 981 contacts (-58.9/contact) +
2D Compatibility (PS) -14429 + (NN) -9296 + (LL) 1280
1D Compatibility (HY) -13600 + (ID) 2650
Total energy: -96524.0 ( -98.39 by residue)
QMean score : 0.384
(partial model without unconserved sides chains):
PDB file :
Tito_1DG9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DG9-query.scw
PDB file :
Tito_Scwrl_1DG9.pdb
: