Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MIFAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGVLDSLPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGP-RPVTCHHVEAAYADVSVDMGKANRLGAGEAVVGGR----------RFHGLAVDV---GNPHLACVDSQLTVDGLAALDVGAPVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGETRSCGTGTVAAAVAALAAVGSPTGTLTVHVPGGEVVVTVTDA-TSFLRGPSVLVARGDLADDWWNAMG |
| 5HA4 Chain:A ((7-276)) | --FTKMHGLGNDFMVVDLISQRAYLDTATIQRLADRHFGVGFDQLLIVE--------------PPDVPEADFKYRIFNADGSEVEQCGNGVRCFARFVHERHLTNKTNITVQTKAGIVKPELGQN-----GWVRVNMGYPKFLPNEIPFVAEEPEALYTLELANDQNISIDVVNMGNPHAVTIVPDVLTADVAGI---GPQVESHKRFPERVNAGFMQVIDDKHVRLRVFERGVGETLACGTGACAAAVSGMRR-GLLANSVEVELAGGKLQIEWQEGDVVWMTGPTTHVYDGRL--------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 5HA4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -122045 for 2101 contacts (-58.1/contact) +
2D Compatibility (PS) -28281 + (NN) -11228 + (LL) 2664
1D Compatibility (HY) -16000 + (ID) 4200
Total energy: -179090.0 ( -85.24 by residue)
QMean score : 0.407
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