Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTSSEPAHGATPKRSPSEGSADNAALCDALAVEHATIYGYGIVSALSPP----GVNFLVADALKQHRHRRDDVIVMLSARGVTAPIAAAGYQ----LP--MQVSSAADAARLAVRMENDGATAWRAVVEHA---ETADDRVFASTALTESAVMATRWNRVLGAWPITAAFPGGDE
1JIG Chain:A ((4-138))
-------------------TNVVEVLNKQVANWNVLYVKLHNYHWYVTGPHFFTLHEKFEEFYNEAGTYIDELAERILALEGKPLATMKEYLATSSVNEGTSKESAEEMVQTLVNDYSALIQELKEGMEVAGEAGDATSADMLLAIHTTLEQHV---------------------
General information:
TITO was launched using:
RESULT:
Template:
1JIG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -40359 for 874 contacts (-46.2/contact) +
2D Compatibility (PS) -13225 + (NN) -8159 + (LL) 1044
1D Compatibility (HY) 400 + (ID) 600
Total energy: -60899.0 ( -69.68 by residue)
QMean score : 0.359
(partial model without unconserved sides chains):
PDB file :
Tito_1JIG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JIG-query.scw
PDB file :
Tito_Scwrl_1JIG.pdb
: