Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MPKFEVPDGWTVQAFRFTLDPTEDQAKALARHFGARRKAYNWTVATLKADIQAWHASGTVTAKPSLRVLRKRWNTVKDDVCVNTETGVAWWPECSKEAYADGIAGAVEAYWNWQTSRAGKRAGKRVGFPRFKRKGRDQDRVSFTTGAMRVEPDRRHLTLPVIGTVRTHENTRRIERLIKAGRARVLAISVRRNGTRLDASVRVLVQRPQQPKVVHPGSRVGVDVGVRRLATVATADGTAIEQVENPRPLGAALRELRHVCRARSRCTKGSRRYRERTTQISRLHRRVNDVRTHHLHVLTTRLAQTHGRIVVEGLDATEMLRQKGLPGARARRRGLSDAALGTPRRHLSYKTVWYGSALVVADRWFPSSKTCHACRHV-QDI-GWD-EQWQCDRCSVVHQRDDCAAINLARYEETSSIVGPVGAAVKRGADRKTGPRPAGGCEARKGSSPKAAEQPRDGVQVA |
| 4AYB Chain:P ((5-40)) | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RCGKCWKTFTDEQLKVLPGVRCPYCGYKIIFMVRKP--------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4AYB.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -11507 for 170 contacts (-67.7/contact) +
2D Compatibility (PS) -3139 + (NN) 944 + (LL) 27860
1D Compatibility (HY) -400 + (ID) 250
Total energy: 13508.0 ( 79.46 by residue)
QMean score : 0.273
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