Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIVGVLVAAATPIISSASATPANIAGMVVFIDPGHNGANDASIGRQVPTGRGGTKNCQASGTSTNSGYPEHTFTWETGLRLRAALNALGVRTALSRGNDNALGPCVDERANMANALRPNAIVSLHADGGP--ASGRGFHVNYSAPPLNAIQAGPSVQFARIMRDQLQA-S-GIPKANYIGQDGLYGRSDLAGLNLAQYPSILVELGNMKNPADSALMESAEGRQKYANALVRGVAGFLATQGQAR
5EMI Chain:A ((2-180))
-----------------------SGKLLVVIDPGHGGKD--------------------SGAPGLGGLLEKDVILPIGKRVAAILEQHGVQAVLTRDADFFV--ELQGRVEIAERVNATAFVSIHANSVDNRPDVNGLEVYYYDS---------GYALAEVVRNTILQNIDTIK------NRGTR-KARFYVLRKSSMPSILVETGYMTGREDNPRLASREYQNQMAEAIARGILKYLQR-----
General information:
TITO was launched using:
RESULT:
Template:
5EMI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -80524 for 1537 contacts (-52.4/contact) +
2D Compatibility (PS) -19600 + (NN) -13011 + (LL) 2596
1D Compatibility (HY) -12400 + (ID) 2550
Total energy: -125489.0 ( -81.65 by residue)
QMean score : 0.473
(partial model without unconserved sides chains):
PDB file :
Tito_5EMI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5EMI-query.scw
PDB file :
Tito_Scwrl_5EMI.pdb
: