Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRTFDLTAALGDRA-NQPEISRLLVAQLMTSNNEDTRKLRRAQEREQTQELNELAHRLAGMASLIHAHAVERACHQLEIACGESSVRKLADAVDDLVTALGELQCELHDWMTMTAPQGTAKS
1Y6D Chain:A ((6-113))
---LNQQKIEELSAEIGSDNVPVLLDIFLGEMDSYIGTLTELQGSEQLLYLKEISHALKSSAASFGADRLCERAIAIDKKAKANQLQEQGMETSEMLALLHITRDAYRSWTN----------
General information:
TITO was launched using:
RESULT:
Template:
1Y6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 4341 for 793 contacts (5.5/contact) +
2D Compatibility (PS) -10773 + (NN) -181 + (LL) 884
1D Compatibility (HY) -2400 + (ID) 700
Total energy: -8829.0 ( -11.13 by residue)
QMean score : 0.230
(partial model without unconserved sides chains):
PDB file :
Tito_1Y6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Y6D-query.scw
PDB file :
Tito_Scwrl_1Y6D.pdb
: