Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRLQTRFAQLKQENRAALVTFVTAGDPDYASSLEILKGL-PAAGADVIELGMPFTDPMADGPAIQLANIRALDGGQTLARTLQMVREFRSGDSETPLVLMGYFNPIHHYGVERFIAEAKEVGVDGLIVVDLPPEHNEDLCHPAQAAGIDFIRLTTPTTGDQRLPTVLEGSSGFVYYVSVAGVTGANAATLEHVEEAVARLRRHTDLPIGIGFGIRSAEHAAAVARL-ADGVVVGSALIDRIA-KARDNAQAVKDVLALCGELAEGVRNAR
2E09 Chain:A ((6-239))
-----------------SLIPYLTAGDPDKQSTLNFLLALDEYAGA--IELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKAFRR-HSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKEFTEIAREEGIKTVFLAAPNTPDERLKVIDDMTTGFVYLVSLYGT----EEIPKTAYDLLRRAKRICRNKVAVGFGVSKREHVVSLLKEGANGVVVGSALVKIIGEKGREATEFLKKKVEELLGI--------
General information:
TITO was launched using:
RESULT:
Template:
2E09.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -164888 for 1952 contacts (-84.5/contact) +
2D Compatibility (PS) -25816 + (NN) -17955 + (LL) 2240
1D Compatibility (HY) -19600 + (ID) 4900
Total energy: -230919.0 ( -118.30 by residue)
QMean score : 0.576
(partial model without unconserved sides chains):
PDB file :
Tito_2E09.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2E09-query.scw
PDB file :
Tito_Scwrl_2E09.pdb
: